cmsearch-multimodel-wf
Version 1

Identifies non-coding RNAs using Rfams covariance models

Inputs

ID Name Description Type
clan_info n/a n/a File
cores n/a n/a int
covariance_models n/a n/a File[]
query_sequences n/a n/a File
catOutputFileName n/a n/a string

Steps

ID Name Description
cmsearch Search sequence(s) against a covariance model database
run_concatenate_matches
remove_overlaps Remove lower scoring overlaps from cmsearch --tblout files.

Outputs

ID Name Description Type
cmsearch_matches n/a n/a File[]
concatenate_matches n/a n/a File
deoverlapped_matches n/a n/a File
help Creators and Submitter
Creators
  • Arnaud Meng
  • Maxim Scheremetjew
Submitter
Activity

Views: 122   Downloads: 1

Created: 25th Feb 2020 at 13:16

Last updated: 25th Feb 2020 at 15:17

Last used: 11th Aug 2020 at 01:47

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