cmsearch-multimodel-wf
Version 1

Workflow Type: Common Workflow Language

Identifies non-coding RNAs using Rfams covariance models

Inputs

ID Name Description Type
catOutputFileName n/a n/a
  • string
clan_info n/a n/a
  • File
cores n/a n/a
  • int
covariance_models n/a n/a
  • array containing
    • File
query_sequences n/a n/a
  • File

Steps

ID Name Description
cmsearch Search sequence(s) against a covariance model database n/a
remove_overlaps Remove lower scoring overlaps from cmsearch --tblout files. n/a
run_concatenate_matches n/a n/a

Outputs

ID Name Description Type
cmsearch_matches n/a n/a
  • array containing
    • File
concatenate_matches n/a n/a
  • File
deoverlapped_matches n/a n/a
  • File

Version History

Version 1 (earliest) Created 25th Feb 2020 at 13:16 by Finn Bacall

Added/updated 7 files


Open master 74b8881
help Creators and Submitter
Creators
Not specified
Additional credit

Arnaud Meng, Maxim Scheremetjew

Submitter
Activity

Views: 923   Downloads: 22

Created: 25th Feb 2020 at 13:16

Last updated: 25th Feb 2020 at 15:17

Last used: 28th Sep 2022 at 17:22

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