InterProScan-v5-chunked-wf
Version 1

Workflow Type: Common Workflow Language

Runs InterProScan on batches of sequences to retrieve functional annotations.

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SEEK ID: https://dev.workflowhub.eu/workflows/27?version=1

Inputs

ID	Name	Description	Type
inputFile	Input file path	Optional, path to fasta file that should be loaded on Master startup. Alternatively, in CONVERT mode, the InterProScan 5 XML file to convert.	File
applications	Analysis	Optional, comma separated list of analyses. If this option is not set, ALL analyses will be run.	../tools/InterProScan/InterProScan-apps.yaml#apps[]?
outputFormat	output format	Optional, case-insensitive, comma separated list of output formats. Supported formats are TSV, XML, JSON, GFF3, HTML and SVG. Default for protein sequences are TSV, XML and GFF3, or for nucleotide sequences GFF3 and XML.	../tools/InterProScan/InterProScan-protein_formats.yaml#protein_formats[]?
databases	n/a	n/a	Directory
chunk_size	n/a	n/a	int?
disableResidueAnnotation	Disables residue annotation	Optional, excludes sites from the XML, JSON output.	boolean?
seqtype	Sequence type	Optional, the type of the input sequences (dna/rna (n) or protein (p)). The default sequence type is protein.	<strong>enum</strong> of: p, n
catOutputFileName	n/a	n/a	string

ID	Name	Description
split_seqs	n/a	n/a
run_interproscan	Run InterProScan on chunked sequence files	n/a
combine_interproscan_results	n/a	n/a

ID	Name	Description	Type
i5Annotations	n/a	n/a	File

Added/updated 9 files

Open master b92a665

Creators and Submitter

Not specified

Maxim Scheremetjew

License

Activity

Views: 1913 Downloads: 253

Created: 25th Feb 2020 at 13:17

Last updated: 25th Feb 2020 at 16:07