TransDecoder-v5-wf-2steps
Download RO Crate
Workflow Type: Common Workflow Language
TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| singleBestOnly | n/a | n/a |
|
| transcriptsFile | n/a | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| extract_long_orfs | Extracts the long open reading frames | n/a |
| predict_coding_regions | Predicts the likely coding regions | n/a |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| bed_output | n/a | n/a |
|
| coding_regions | n/a | n/a |
|
| gff3_output | n/a | n/a |
|
| peptide_sequences | n/a | n/a |
|
Creators and SubmitterLicense
Activity
Views: 786 Downloads: 7
Created: 25th Feb 2020 at 13:19
Last updated: 25th Feb 2020 at 15:17
Last used: 4th Dec 2021 at 09:56
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AttributionsNone
Version History
Version 1 (earliest) Created 25th Feb 2020 at 13:19 by Finn Bacall
Added/updated 7 files
Open
master8687571
Related items
Teams: MGnify, nf-core, Workflow Hub Administration, Galaxy COVID-19, Testing
Organizations: University of Manchester, Working from Home
MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
Space: This Team is not associated with a Space
Public web page: https://www.ebi.ac.uk/metagenomics/
