TransDecoder-v5-wf-2steps Version 2
Download RO CrateTransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| singleBestOnly | n/a | n/a | boolean? |
| transcriptsFile | n/a | n/a | File |
Steps
| ID | Name | Description |
|---|---|---|
| extract_long_orfs | Extracts the long open reading frames | |
| predict_coding_regions | Predicts the likely coding regions |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| bed_output | n/a | n/a | File |
| coding_regions | n/a | n/a | File |
| gff3_output | n/a | n/a | File |
| peptide_sequences | n/a | n/a | File |
Creators and SubmitterLicense
Activity
Views: 251 Downloads: 6
Created: 25th Feb 2020 at 13:19
Last updated: 25th Feb 2020 at 15:17
Last used: 17th Jan 2021 at 20:32
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AttributionsNone
Version History
Version 2 (latest) Created 25th Feb 2020 at 13:47 by Finn Bacall
Fixed diagram
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Teams: MGnify, nf-core, Workflow Hub Administration, Galaxy COVID-19, Testing
Organizations: University of Manchester
MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
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Public web page: https://www.ebi.ac.uk/metagenomics/
