TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
Inputs
ID | Name | Description | Type |
---|---|---|---|
singleBestOnly | n/a | n/a | boolean? |
transcriptsFile | n/a | n/a | File |
Steps
ID | Name | Description |
---|---|---|
extract_long_orfs | Extracts the long open reading frames | |
predict_coding_regions | Predicts the likely coding regions |
Outputs
ID | Name | Description | Type |
---|---|---|---|
bed_output | n/a | n/a | File |
coding_regions | n/a | n/a | File |
gff3_output | n/a | n/a | File |
peptide_sequences | n/a | n/a | File |

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Views: 251 Downloads: 6
Created: 25th Feb 2020 at 13:19
Last updated: 25th Feb 2020 at 15:17
Last used: 17th Jan 2021 at 20:32

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Version History
Version 2 (latest) Created 25th Feb 2020 at 13:47 by Finn Bacall
Fixed diagram