TransDecoder-v5-wf-2steps
Version 2

TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

Inputs

ID Name Description Type
singleBestOnly n/a n/a boolean?
transcriptsFile n/a n/a File

Steps

ID Name Description
extract_long_orfs Extracts the long open reading frames
predict_coding_regions Predicts the likely coding regions

Outputs

ID Name Description Type
bed_output n/a n/a File
coding_regions n/a n/a File
gff3_output n/a n/a File
peptide_sequences n/a n/a File
help Creators and Submitter
Creator
  • Maxim Scheremetjew
Submitter
Activity

Views: 251   Downloads: 6

Created: 25th Feb 2020 at 13:19

Last updated: 25th Feb 2020 at 15:17

Last used: 17th Jan 2021 at 20:32

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Version History

Version 2 (latest) Created 25th Feb 2020 at 13:47 by Finn Bacall

Fixed diagram

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