Workflow Type: Common Workflow Language

TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

Inputs

ID Name Description Type
singleBestOnly n/a n/a
  • boolean
transcriptsFile n/a n/a
  • File

Steps

ID Name Description
extract_long_orfs Extracts the long open reading frames n/a
predict_coding_regions Predicts the likely coding regions n/a

Outputs

ID Name Description Type
bed_output n/a n/a
  • File
coding_regions n/a n/a
  • File
gff3_output n/a n/a
  • File
peptide_sequences n/a n/a
  • File
Total size: 27.3 KB
help Creators and Submitter
Creator
  • Maxim Scheremetjew
Submitter
Activity

Views: 786   Downloads: 7

Created: 25th Feb 2020 at 13:19

Last updated: 25th Feb 2020 at 15:17

Last used: 4th Dec 2021 at 09:56

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Version History

Version 2 (latest) Created 25th Feb 2020 at 13:47 by Finn Bacall

Fixed diagram


Open master 0913e3d

Version 1 (earliest) Created 25th Feb 2020 at 13:19 by Finn Bacall

Added/updated 7 files


Open master 8687571

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