Workflows

What is a Workflow?

575 Workflows visible to you, out of a total of 680

SSQuAWK4.0.2

Testing

SARS-CoV-2 Sequence Quality Assurance Workflow Kontraption, version 4.0.2

Type: Galaxy

Creators: None

Submitter: Stian Soiland-Reyes

Created: 14th Mar 2023 at 11:09

atacseq/main

Testing

Tests Passing

This workflow take as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will plot the number of reads for each fragment length.

Type: Galaxy

Creator: Lucille Delisle

Submitter: Finn Bacall

Created: 23rd Nov 2022 at 10:41

COMPSs K-means

Testing

K-means clustering is a method of cluster analysis that aims to partition ''n'' points into ''k'' clusters in which each point belongs to the cluster with the nearest mean. It follows an iterative refinement strategy to find the centers of natural clusters in the data.

Type: COMPSs

Creators: None

Submitter: Raül Sirvent

Created: 11th Oct 2022 at 11:28

SVGZ COMPSs Matrix Multiplication, out-of-core using files

Testing