Workflows

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110 Workflows visible to you, out of a total of 153

nf-core/rnaseq

GitHub Actions CI Status GitHub Actions Linting Status AWS CI ...

Type: Nextflow

Creator: Phil Ewels

Submitter: Finn Bacall

An example Workflow RO-Crate, showing a Galaxy workflow with an abstract CWL description and diagram. This Crate is deliberately excessively populated to show the exensible possibilities (e.g. including a BioCompute Object and a Planemo test), refer to the Workflow RO-Crate profile for minimal requirements.

Type: Galaxy

Creator: Stian Soiland-Reyes

Submitter: Stian Soiland-Reyes

This PyCOMPSs workflow tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) in PyCOMPSs for execution on HPC. Three variants of the MD Setup workflows are included, supporting a list of structures, a list of mutations, or a cumulative set of mutations.

Type: PyCOMPSs

Creator: Adam Hospital, Pau Andrio

Submitter: Stian Soiland-Reyes

Stable

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bio.tools Snakemake Deploy Docker image ...

Type: Snakemake

Creators: None

Submitter: Kim Philipp Jablonski

V-pipe is a snakemake pipeline designed for analysing NGS data of short viral genomes.

Type: Common Workflow Language

Creators: Alban Gaignard, Susana Posada Céspedes, David Seifert, Tobias Marschall, Niko Beerenwinkel

Submitter: Alban Gaignard

This PyCOMPSs workflow tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) in PyCOMPSs for execution on HPC. Three variants of the MD Setup workflows are included, supporting a list of structures, a list of mutations, or a cumulative set of mutations.

Type: PyCOMPSs

Creator: Adam Hospital, Pau Andrio

Submitter: Stian Soiland-Reyes

Stable

Summary

This notebook demonstrates how to retrieve metadata associated to the paper A SARS-CoV-2 cytopathicity dataset generated by high-content screening of a large drug repurposing collection and available in IDR at idr0094-ellinger-sarscov2. Over 300 compounds were used in this investigation. This notebook allows the user to calculate the half maximal inhibitory concentration (IC50) for ...

Type: Jupyter

Creators: None

Submitter: JEAN-MARIE BUREL

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