Workflows

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125 Workflows visible to you, out of a total of 184
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Summary

This notebook demonstrates how to retrieve metadata associated to the paper A SARS-CoV-2 cytopathicity dataset generated by high-content screening of a large drug repurposing collection and available in IDR at idr0094-ellinger-sarscov2. Over 300 compounds were used in this investigation. This notebook allows the user to calculate the half maximal inhibitory concentration (IC50) for ...

Type: Jupyter

Creators: None

Submitter: JEAN-MARIE BUREL

No description specified

Type: Common Workflow Language

Creators: None

Submitter: Finn Bacall

Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps:

  • FastQC (read quality control)
  • NGTax 2.0
  • Picrust 2
  • Export module for ngtax

Type: Common Workflow Language

Creators: None

Submitter: Finn Bacall

Work-in-progress

This PyCOMPSs workflow tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) in PyCOMPSs for execution on HPC. Three variants of the MD Setup workflows are included, supporting a list of structures, a list of mutations, or a cumulative set of mutations.

Type: PyCOMPSs

Creator: Adam Hospital, Pau Andrio

Submitter: Stian Soiland-Reyes

Work-in-progress

RO-Crate containing execution provenance about the MaxQuant-Workflow that analyze label-free data with MaxQuant based on Nextflow, running with SDRF implemented. Normalization and statistical comparisons using NormalyzerDE are conducted on the MaxQuant result

Type: Nextflow

Creator: Veit Schwämmle,Julian Uszkoreit

Submitter: Laura Rodriguez-Navas

sort lines and change text to upper case

Type: Galaxy

Creators: None

Submitter: Simone Leo

COVID-19: variation analysis reporting

This workflow takes table of variants produced by any of the other four variant calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates a list of variants by Samples and by Variant.

Type: Galaxy

Creator: Wolfgang Maier

Submitter: Simone Leo

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