Workflows
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Annotating the novel peptides
Associated Tutorial
This workflows is part of the tutorial Neoantigen 5: Variant Annotation, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): ...
Merging Fusion and non-normal databases + Discovery peptidomics using FragPipe
Associated Tutorial
This workflows is part of the tutorial Neoantigen 3: Database merge and FragPipe discovery, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Create a protein Fusion database through the Arriba workflow
Associated Tutorial
This workflows is part of the tutorial Neoantigen 1: Fusion-Database-Generation, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Predict binding using IEDB and check novelty peptides with PepQuery
Associated Tutorial
This workflows is part of the tutorial Neoantigen 7: IEDB binding PepQuery Validated Neopeptides, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Prediction of HLA binding for verified candidates
Associated Tutorial
This workflows is part of the tutorial Neoantigen 6: Predicting HLA Binding, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
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Associated Tutorial
This workflows is part of the tutorial Removing the effects of the cell cycle, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Single-cell quality control with scater
Associated Tutorial
This workflows is part of the tutorial Single-cell quality control with scater, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...