Workflows

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125 Workflows visible to you, out of a total of 184
Stable

Exome SAMtools Workflow

Type: Nextflow

Creator: Laura Rodriguez-Navas

Submitter: Laura Rodriguez-Navas

Work-in-progress

I don't even know. Only works on BSC.

Type: Common Workflow Language

Creators: None

Submitter: Stian Soiland-Reyes

Stable

Summary

This tutorial aims to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Mitogen-activated protein kinase 14 (p38-α) protein (PDB code 3HEC), a well-known Protein Kinase enzyme, in complex with the FDA-approved Imatinib, (PDB Ligand code STI, DrugBank Ligand Code DB00619), a small molecule kinase inhibitor used to treat certain types of cancer.

Workflow engine is a jupyter notebook. It ...

Type: Unrecognized workflow type

Creator: Genís Bayarri

Submitter: Douglas Lowe

workflow-test-fixture

A workflow and associated files for use in SEEK's tests

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

sort lines and change text to upper case

Type: Galaxy

Creators: None

Submitter: Finn Bacall

Stable

Exome Alignment Workflow

Type: Common Workflow Language

Creator: Laura Rodriguez-Navas

Submitter: Laura Rodriguez-Navas

Stable

Rare disease researchers workflow is that they submit their raw data (fastq), run the mapping and variant calling RD-Connect pipeline and obtain unannotated gvcf files to further submit to the RD-Connect GPAP or analyse on their own.

This demonstrator focuses on the variant calling pipeline. The raw genomic data is processed using the RD-Connect pipeline (Laurie et al., 2016) running on the standards (GA4GH) compliant, interoperable container ...

Type: Nextflow

Creators: José Mª Fernández, Víctor Fernández

Submitters: Laura Rodriguez-Navas, José Mª Fernández

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