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Tag
covid-196
Submitter
Finn Bacall8
Team
Galaxy COVID-198
Creator
Finn Bacall6
8
Workflows visible to you, out of a total of 8
Preprocessing of raw SARS-CoV-2 reads
The raw reads available so far are generated from bronchoalveolar lavage fluid (BALF) and are metagenomic in nature: they contain human reads, reads from potential bacterial co-infections as well as true COVID-19 reads.
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What's the point?
Assess quality of reads, remove adapters and remove reads mapping to human genome.
The outline
Illumina and Oxford nanopore reads are pulled from the ...
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