Diploid 3.0
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Download RO-Crate
Run on GalaxyCalling variants in diploid systems
Associated Tutorial
This workflows is part of the tutorial Diploid, available in the GTN
Thanks to...
Tutorial Author(s): Anton Nekrutenko, Nicola Soranzo
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| GIAB-Ashkenazim-Trio-hg19.bam | GIAB-Ashkenazim-Trio-hg19.bam | n/a |
|
| GIAB-Ashkenazim-Trio.tabular | GIAB-Ashkenazim-Trio.tabular | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | SnpEff Download | toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3r.1 |
| 3 | FreeBayes | toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0 |
| 4 | VcfAllelicPrimitives: | toolshed.g2.bx.psu.edu/repos/devteam/vcfallelicprimitives/vcfallelicprimitives/0.0.3 |
| 5 | SnpEff eff: | toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1 |
| 6 | GEMINI load | toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.18.1.0 |
| 7 | GEMINI_db_info | toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.18.1.0 |
| 8 | GEMINI_query2 | toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.18.1.0 |
| 9 | GEMINI_query1 | toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.18.1.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
Version History
3.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche
Added/updated 4 files
Open
master8683f9d
Creators and Submitter
Views: 1043 Downloads: 305 Runs: 0
Created: 25th Jun 2024 at 10:57
Last updated: 25th Jun 2024 at 10:58
Tags AttributionsNone
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