Workflow constructed from history 'Tuto Obitools'
3.0 (earliest)

1.0 (latest)

3.0 (earliest)

Visit source

Workflow Type: Galaxy

Metabarcoding/eDNA through Obitools

Associated Tutorial

This workflows is part of the tutorial Workflow constructed from history 'Tuto Obitools', available in the GTN

Tutorial Author(s): Coline Royaux, Olivier Norvez, Eric Coissac, Frédéric Boyer, Yvan Le Bras

Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, Pôle National de Données de Biodiversité

SEEK ID: https://dev.workflowhub.eu/workflows/1274?version=1

ID	Name	Description	Type
wolf_tutorial.zip?download=1	wolf_tutorial.zip?download=1	n/a	File

ID	Name	Description
1	Illuminapairedend	toolshed.g2.bx.psu.edu/repos/iuc/obi_illumina_pairend/obi_illumina_pairend/1.2.13
2	Unzip	toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2
3	FastQC	toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0
4	FASTQ Groomer	toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.5
5	obigrep	toolshed.g2.bx.psu.edu/repos/iuc/obi_grep/obi_grep/1.2.13
6	Line/Word/Character count	wc_gnu
7	Line/Word/Character count	wc_gnu
8	NGSfilter	toolshed.g2.bx.psu.edu/repos/iuc/obi_ngsfilter/obi_ngsfilter/1.2.13
9	obiuniq	toolshed.g2.bx.psu.edu/repos/iuc/obi_uniq/obi_uniq/1.2.13
10	obiannotate	toolshed.g2.bx.psu.edu/repos/iuc/obi_annotate/obi_annotate/1.2.13
11	obistat	toolshed.g2.bx.psu.edu/repos/iuc/obi_stat/obi_stat/1.2.13
12	obigrep	toolshed.g2.bx.psu.edu/repos/iuc/obi_grep/obi_grep/1.2.13
13	obigrep	toolshed.g2.bx.psu.edu/repos/iuc/obi_grep/obi_grep/1.2.13
14	obiclean	toolshed.g2.bx.psu.edu/repos/iuc/obi_clean/obi_clean/1.2.13
15	NCBI BLAST+ blastn	toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0
16	Filter sequences by ID	toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7
17	Filter sequences by ID	toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7
18	obitab	toolshed.g2.bx.psu.edu/repos/iuc/obi_tab/obi_tab/1.2.13
19	obitab	toolshed.g2.bx.psu.edu/repos/iuc/obi_tab/obi_tab/1.2.13
20	Join two Datasets	join1
21	Join two Datasets	join1
22	Cut	Cut1
23	Filter	Filter1