COSIFER

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COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

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Reference

Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular interaction networks".Bioinformatics (2020).

SEEK ID: https://dev.workflowhub.eu/workflows/140?version=3

Inputs

ID Name Description Type
data_matrix n/a Gene expression data matrix
  • File
gmt_filepath n/a Optional GMT file to perform inference on multiple gene sets
  • File?
index_col n/a Column index in the data. Defaults to None, a.k.a., no index
  • int?
outdir n/a Path to the output directory
  • string
separator n/a Separator for the data. Defaults to .
  • string?
samples_on_rows n/a Flag that indicates that data contain the samples on rows. Defaults to False.
  • boolean?

Steps

ID Name Description
cosifer n/a n/a

Outputs

ID Name Description Type
resdir n/a n/a
  • Directory

Version History

Version 3 (latest) Created 16th Apr 2021 at 09:58 by Laura Rodriguez-Navas

update input descriptions


Open master a074203

Version 2 Created 22nd Mar 2021 at 12:40 by Laura Rodriguez-Navas

No revision comments

Open master b284735

Version 1 (earliest) Created 2nd Feb 2021 at 12:48 by Laura Rodriguez-Navas

Added/updated 1 files


Open master 2970f2a
help Creators and Submitter
Creators
Submitter
License
Apache Software License 2.0
Activity

Views: 1732   Downloads: 39

Created: 2nd Feb 2021 at 12:48

Last updated: 16th Apr 2021 at 10:36

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