phmmer-v3.2-chunked-wf
Version 1

Workflow Type: Common Workflow Language

Chunked version of phmmer-v3.2.cwl

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Inputs

ID Name Description Type
bitscoreThreshold report sequences >= this bit score threshold in output n/a
  • int?
cpu Number of parallel CPU workers to use for multithreads n/a
  • int?
seqFile Query sequence(s) file Search one or more query protein sequences against a protein sequence database.
  • File
seqdb Target database of sequences n/a
  • File
fullPhmmerMatches n/a n/a
  • string
fullPhmmerOutput n/a n/a
  • string

Steps

ID Name Description
split_seqs n/a n/a
calculate_phmmer_matches Calculates phmmer matches on chunked sequence files n/a
combine_phmmer_matches n/a n/a
combine_phmmer_output n/a n/a

Outputs

ID Name Description Type
matches n/a n/a
  • File
programOutput n/a n/a
  • File

Version History

Version 1 (earliest) Created 25th Feb 2020 at 13:17 by Finn Bacall

Added/updated 7 files


Open master 2eb361f
help Creators and Submitter
Creators
Not specified
Additional credit

Maxim Scheremetjew

Submitter
Activity

Views: 1814   Downloads: 280

Created: 25th Feb 2020 at 13:17

Last updated: 25th Feb 2020 at 15:17

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