Workflow Type: Common Workflow Language
Open
Chunked version of phmmer-v3.2.cwl
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Inputs
ID | Name | Description | Type |
---|---|---|---|
bitscoreThreshold | report sequences >= this bit score threshold in output | n/a |
|
cpu | Number of parallel CPU workers to use for multithreads | n/a |
|
seqFile | Query sequence(s) file | Search one or more query protein sequences against a protein sequence database. |
|
seqdb | Target database of sequences | n/a |
|
fullPhmmerMatches | n/a | n/a |
|
fullPhmmerOutput | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
split_seqs | n/a | n/a |
calculate_phmmer_matches | Calculates phmmer matches on chunked sequence files | n/a |
combine_phmmer_matches | n/a | n/a |
combine_phmmer_output | n/a | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
matches | n/a | n/a |
|
programOutput | n/a | n/a |
|
Version History
Version 1 (earliest) Created 25th Feb 2020 at 13:17 by Finn Bacall
Added/updated 7 files
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master
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Creators and Submitter
Creators
Not specifiedAdditional credit
Maxim Scheremetjew
Submitter
License
Activity
Views: 1814 Downloads: 280
Created: 25th Feb 2020 at 13:17
Last updated: 25th Feb 2020 at 15:17
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