phmmer-v3.2-chunked-wf
Version 1

Workflow Type: Common Workflow Language

Chunked version of phmmer-v3.2.cwl

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SEEK ID: https://dev.workflowhub.eu/workflows/28?version=1

Inputs

ID	Name	Description	Type
bitscoreThreshold	report sequences >= this bit score threshold in output	n/a	int?
cpu	Number of parallel CPU workers to use for multithreads	n/a	int?
seqFile	Query sequence(s) file	Search one or more query protein sequences against a protein sequence database.	File
seqdb	Target database of sequences	n/a	File
fullPhmmerMatches	n/a	n/a	string
fullPhmmerOutput	n/a	n/a	string

ID	Name	Description
split_seqs	n/a	n/a
calculate_phmmer_matches	Calculates phmmer matches on chunked sequence files	n/a
combine_phmmer_matches	n/a	n/a
combine_phmmer_output	n/a	n/a

ID	Name	Description	Type
matches	n/a	n/a	File
programOutput	n/a	n/a	File

Added/updated 7 files

Open master 2eb361f

Creators and Submitter

Not specified

Maxim Scheremetjew

License

Activity

Views: 1770 Downloads: 266

Created: 25th Feb 2020 at 13:17

Last updated: 25th Feb 2020 at 15:17