MuSiC-Deconvolution: Compare
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/827?version=1

Inputs

ID Name Description Type
ESet Object - Bulk:T2D #main/ESet Object - Bulk:T2D n/a
  • File
ESet Object - Bulk:normal #main/ESet Object - Bulk:normal n/a
  • File
ESet Object - Single cell Total #main/ESet Object - Single cell Total n/a
  • File
ESet Object - Single cell:T2D #main/ESet Object - Single cell:T2D n/a
  • File
ESet Object - Single cell:normal #main/ESet Object - Single cell:normal n/a
  • File

Steps

ID Name Description
5 MuSiC Compare: Like with like Here the T2D bulk sample is inferred from the sc T2D sample, while the normal bulk sample is inferred from the sc normal sample toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
6 MuSiC Compare: healthyscref Here the T2D bulk sample and the normal sample are separately compared separately against the healthy sc reference only (excluding unhealthy sc reference) toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
7 MuSiC Compare - Altogether toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 10:34 by Helena Rasche

Added/updated 3 files


Open master 4c1ad26
help Creators and Submitter
Creators
  • Wendi Bacon
  • Mehmet Tekman
Submitter
Tool
MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC
License
Creative Commons Attribution 4.0 International
Activity

Views: 50

Created: 22nd Apr 2024 at 10:34

Last updated: 22nd Apr 2024 at 10:34

help Attributions

None

Total size: 32 KB
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