MuSiC-Deconvolution: Data generation | sc | metadata
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/829?version=1

Steps

ID Name Description
0 EBI SCXA Data Retrieval toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.1+galaxy1
1 Cut Cut1
2 Add line to file toolshed.g2.bx.psu.edu/repos/bgruening/add_line_to_file/add_line_to_file/0.1.0
3 Reformatting metadata columns Adjust this step as necessary toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.2
4 Join two Datasets Experimental designs often include extra stuff (likely the barcodes not meeting the EBI pre-processing criteria), so this way we streamline down to only those barcodes in the barcodes file. join1
5 Advanced Cut Gets rid of the duplicated columns toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 10:34 by Helena Rasche

Added/updated 3 files


Open master 8c5576d
help Creators and Submitter
Creators
  • Wendi Bacon
  • Mehmet Tekman
Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 51

Created: 22nd Apr 2024 at 10:34

Last updated: 22nd Apr 2024 at 10:34

help Attributions

None

Total size: 19.4 KB
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