nf-core/bcellmagic
Version 1

Workflow Type: Nextflow

nf-core/bcellmagic

Build Status Nextflow DOI install with bioconda Docker Singularity Container available

Introduction

The nf-core/bcellmagic pipeline is built to analyze B-cell repertoire sequencing data. It makes use of the Immcantation 2.5.0 toolset and requires targeted sequencing data of the V, D, J and C regions of the B-cell receptor (primers for the V and C genes).

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/bcellmagic pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Credits

nf-core/bcellmagic was originally written by Gisela Gabernet, Simon Heumos, Alexander Peltzer.

Total size: 178 KB
help Creators and Submitter
Creators
  • Gisela Gabernet
  • Simon Heumos
  • Alexander Peltzer
Submitter
License
Activity

Views: 614   Downloads: 19

Created: 25th Feb 2020 at 11:02

Last updated: 25th Feb 2020 at 15:19

Last used: 28th Sep 2021 at 03:06

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Version History

Version 1 (earliest) Created 25th Feb 2020 at 11:02 by Finn Bacall

Added/updated 30 files


Open master b0bb679

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