nf-core/bcellmagic
Version 1

nf-core/bcellmagic

Build Status
Nextflow
DOI
install with bioconda
Docker
Singularity Container available

Introduction

The nf-core/bcellmagic pipeline is built to analyze B-cell repertoire sequencing data. It makes use of the Immcantation 2.5.0 toolset and requires targeted sequencing data of the V, D, J and C regions of the B-cell receptor (primers for the V and C genes).

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/bcellmagic pipeline comes with documentation about the pipeline, found in the docs/ directory:


  1. Installation

  2. Pipeline configuration

  3. Running the pipeline

  4. Output and how to interpret the results

  5. Troubleshooting

Credits

nf-core/bcellmagic was originally written by Gisela Gabernet, Simon Heumos, Alexander Peltzer.

help Creators and Submitter
Creators
  • Gisela Gabernet
  • Simon Heumos
  • Alexander Peltzer
Submitter
License
Activity

Views: 166   Downloads: 4

Created: 25th Feb 2020 at 11:02

Last updated: 25th Feb 2020 at 15:19

Last used: 23rd Sep 2020 at 21:01

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