Version 1

Workflow Type: Nextflow


Build Status Nextflow DOI install with bioconda Docker Singularity Container available


The nf-core/bcellmagic pipeline is built to analyze B-cell repertoire sequencing data. It makes use of the Immcantation 2.5.0 toolset and requires targeted sequencing data of the V, D, J and C regions of the B-cell receptor (primers for the V and C genes).

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.


The nf-core/bcellmagic pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting


nf-core/bcellmagic was originally written by Gisela Gabernet, Simon Heumos, Alexander Peltzer.

Version History

Version 1 (earliest) Created 25th Feb 2020 at 11:02 by Finn Bacall

Added/updated 30 files

Open master b0bb679
help Creators and Submitter
Not specified
Additional credit

Gisela Gabernet, Simon Heumos, Alexander Peltzer


Views: 925   Downloads: 28

Created: 25th Feb 2020 at 11:02

Last updated: 25th Feb 2020 at 15:19

Last used: 28th Sep 2022 at 08:35

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