Workflows

FastQC42 MultiQC27 SAMtools21 Cutadapt16 Bowtie 214 ggplot213 scikit-learn13 BWA12 Galactic Circos12 SCANPY12 Bandage11 BEDTools11 fastp11 JBrowse11 mothur11 QUAST11 BUSCO9 DeepTools9 BamTools8 FreeBayes8 seqtk8 Trimmomatic8 HISAT27 kraken27 Minimap27 NanoPlot7 BCFtools6 FeatureCounts6 MACS6 RSeQC6 STAR6 taxonomy_krona_chart6 Trim Galore6 DESeq25 DropletUtils5 Flye5 GEMINI5 Open Babel5 annotatemyids4 BLAST4 bx-python4 gffread4 MaxQuant4 MEGAHIT4 msConvert4 MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4 Salmon4 SRA Software Toolkit4 Stacks4 StringTie4 Unicycler4 Biopython3 Bwa-mem23 Cardinal3 Clustal 2 (Clustal W, Clustal X)3 COMBAT-TB Workbench3 GenomeScope 2.03 GOseq3 Gromacs3 HUMAnN23 Merqury3 MetaPhlAn3 MSstatsTMT3 Newick Utilities3 Prokka3 pyGenomeTracks3 Racon3 snippy3 Bakta2 Bio3D2 BioRuby2 Bracken2 CellProfiler2 ChEMBL2 chemfp2 compute_sequence_length2 cshl_fastx_reverse_complement2 Diamond2 eggNOG-mapper v22 epiScanpy2 funannotate2 Galaxy Image Analysis2 gffcompare2 humann2 InterProScan (EBI)2 KrakenTools2 limma2 lofreq2 MAKER2 MDAnalysis2 Medaka2 metaQuantome2 metaspades2 NGSUtils2 The Protein Data Bank (PDB)2 QIIME2 R2 RDKit2 RepeatMasker2 scikit-image2 SeqCode2 snpEff2 staramr2 tb-profiler2 tbl2gff32 UMI-tools2 Unipept2 UniProt2 Vcflib2 Workflow4Metabolomics2 xcms2 ABRicate1 AmberTools1 antiSMASH1 Apollo1 AUGUSTUS1 bed to protein map1 blockbuster1 Bowtie1 ChemicalToolbox1 ChIPpeakAnno1 ChiRA1 Circos1 Clair31 clusterProfiler1 customProDB1 diaPASEF1 EGA1 EGSEA1 European Nucleotide Archive (ENA)1 ewastools1 export2graphlan1 FastTree1 FASTX-Toolkit1 FEELnc1 fgsea1 Filtlong1 FlashLFQ1 FREEC1 GAEVAL1 Galaxy1 GATK1 GECKO1 gfastats1 GOEnrichment1 GraPhlAn1 Heinz1 HiCExplorer1 Integron Finder1 ISEScan1 IsoformSwitchAnalyzeR1 IWTomics1 Krona1 LASTZ1 MAFFT1 MAGeCK1 MALDIquant1 Matchms1 MEME1 MethylDackel1 miniasm1 miRDeep21 MLST1 MSstats1 mzToSQLite1 NCBI Resources1 Nextflow1 OBITools1 pangolin1 pathview1 Peakachu1 PfamScan1 pilon1 PlasFlow1 PlasmidFinder1 Polypolish1 Proteinortho1 purge_dups1 PYLFIRE1 pymethylprocess1 RAMClustR1 RapidNJ1 RAxML1 RCAS1 Recentrifuge1 RED1 RIAssigner1 rnaQUAST1 SALSA1 scater1 shovill1 Smudgeplots1 SNAP1 SortMeRNA1 SPAdes1 SuCOS1 Targetfinder.org1 TransDecoder1 TRANSIT1 Trinity1 Trinotate1 VarScan1 VelvetOptimiser1 WoLF PSORT1 More...

Galaxy327 Nextflow96 Common Workflow Language32 COMPSs20 Snakemake4 Jupyter1 KNIME1 My type1 Taverna1 More...

Proteomics32 Transcriptomics28 nf-core22 covid-1919 microbiome19 assembly18 ecology17 genome-annotation15 variant-analysis15 statistics14 name:transcriptomics12 visualisation12 computational-chemistry10 covid19.galaxyproject.org10 epigenetics9 ml9 name:singlecell9 galaxy-interface8 introduction8 LG-WF8 name:training8 cancer6 nanopore6 UX6 climate5 genome-assembly5 GTN5 metagenomics5 pediatric5 SARS-CoV-25 single-cell5 ARTIC4 Cheminformatics4 evolution4 HiFi4 Metabolomics4 name:BY-COVID4 name:scRNA-seq4 sequence-analysis4 variant-calling4 cat3 earth-system3 fastq3 genome_assembly3 hifiasm3 imaging3 name:trajectory_analysis3 Ocean3 Pangeo3 rna3 rna-seq3 synthetic-biology3 annotation2 CellProfiler2 classification2 contributing2 cosifer2 dna2 microgalaxy2 name:single-cell2 ONT2 test2 10x1 16s1 adna1 alignment1 amplicon-sequencing1 ancientdna1 arabidopsis1 asaim1 atac-seq1 ATACseq1 b-cell1 bacterial-genomes1 big-data1 binning1 Bioinformatics1 bisulfite-sequencing1 cage1 cage-seq1 cageseq-data1 chip1 chip-seq1 chromatin-accessibiity1 chromatin-immunoprecipitation1 clinical1 clustering1 community-detection1 copernicus1 covd-191 covid191 crispr1 crispr-cas91 data-independent-proteomics1 deep-variant1 deeplearning1 denovo1 denovo-assembly1 dia-proteomics1 dna-methylation1 emergen_validated1 example1 Expospomics1 fnn1 GC-MS1 gene-expression1 Genomics1 geosciences1 google1 guide-seq1 hCNV1 hla1 hla-typing1 hybrid-assembly1 immcantation1 immune1 immunology1 introductions1 Isoseq1 iwc1 iwtomics1 k-mer1 kmer1 kmer-counting1 kmer-frequency-count1 macs21 Marineomics1 mass-spectrometry1 MaxQuant1 methyl-seq1 MIRACUM1 mirna1 moleculardynamics1 name:alternative_splicing1 name:circos1 name:data-management1 name:deconvolution1 name:GTN1 name:single_cell1 name:viz1 nanopore-sequencing1 networks1 ngs-pipeline1 NormalyzerDE1 optitype1 PacBio1 pathogen-genomics1 peak-calling1 peptides1 personalized-medicine1 population-genetics1 prokaryote1 PubMed1 PubTator1 purge_dups1 qiime1 regression1 RetroPath1 reverse1 rrna1 samtools1 screening1 SDRF1 sempi31 shotgun-ms1 text-mining1 variant-annotation1 vgp1 More...

Helena Rasche284 WorkflowHub Sandbox Bot69 Finn Bacall52 Raül Sirvent17 Stian Soiland-Reyes15 Laura Rodriguez-Navas12 Simone Leo10 Jane Doe10 Ignacio Eguinoa8 Douglas Lowe6 Bert Droesbeke3 Johan Gustafsson3 Robin Long2 Kiran K Telukunta1 Kaushik Ghose1 Stuart Owen1 Hervé Ménager1 Alban Gaignard1 Luca Pireddu1 JEAN-MARIE BUREL1 Kim Philipp Jablonski1 Alexandra Has1 Paolo Uva1 Nandan Deshpande1 Terry Bertozzi1 More...

Galaxy Training Network284 nf-core86 Testing52 VIB-ELIXIR-BE12 Workflow Hub Administration11 MGnify9 LifeMonitorDev9 Galaxy COVID-198 iPC: individualizedPaediatricCure5 Australian BioCommons Dev5 IWC Workflows4 Demonstrator #73 My team3 UX study leave2 UX study koehorst2 Seven Bridges Open Workflows1 test1 V-pipe1 Team11 ux study team1 UXStudy1 Testing_proteomics1 IGG-Bioinfo1 More...

General369

Raül Sirvent8 Finn Bacall7 Laura Rodriguez-Navas6 Ignacio Eguinoa6 Genís Bayarri6 Alexandra Has6 José Mª Fernández4 Stian Soiland-Reyes3 Kiran K Telukunta1 Kaushik Ghose1 Alban Gaignard1 Mar Batlle1 Jasper Koehorst1 Georgie Samaha1 Nandan Deshpande1 Terry Bertozzi1 More...

nf-core20 INB collection5 Test Collection1 IDR1

Computer science1 Marine biology1 Metagenomics1 Sequence assembly1

Genome assembly2 Phylogenetic footprinting1 Sequence clustering1

Stable25 Work-in-progress15

Not available8 Passing3 All failing1