Workflows

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96 Workflows visible to you, out of a total of 135

Transcriptome assembly workflow (single-end version)

Type: Common Workflow Language

Creator: Arnaud Meng, Maxim Scheremetjew

Submitter: Finn Bacall

Transcripts annotation workflow

Type: Common Workflow Language

Creator: Arnaud Meng, Maxim Scheremetjew, Michael Crusoe

Submitter: Finn Bacall

TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

Type: Common Workflow Language

Creator: Maxim Scheremetjew

Submitter: Finn Bacall

No description specified

Type: Common Workflow Language

Creators: None

Submitter: Finn Bacall

Precision HLA typing from next-generation sequencing data using OptiType.

Table of Contents

Introduction Quick Start

With Docker With Singularity

Documentation Pipeline DAG

Input fastq Input bam

Credits

Introduction

OptiType is a HLA genotyping algorithm based on integer linear programming. Reads of whole exome/genome/transcriptome sequencing data are mapped against a reference of known MHC class I alleles. To produce accurate 4-digit HLA genotyping predictions, all major and minor HLA-I loci are ...

Type: Nextflow

Creators: None

Submitter: Finn Bacall

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