FastQC42 MultiQC27 SAMtools21 Cutadapt16 Bowtie 214 ggplot213 scikit-learn13 BWA12 Galactic Circos12 SCANPY12 Bandage11 BEDTools11 fastp11 JBrowse11 mothur11 QUAST11 BUSCO9 DeepTools9 BamTools8 FreeBayes8 seqtk8 Trimmomatic8 HISAT27 kraken27 Minimap27 NanoPlot7 BCFtools6 FeatureCounts6 MACS6 RSeQC6 STAR6 taxonomy_krona_chart6 Trim Galore6 DESeq25 DropletUtils5 Flye5 GEMINI5 Open Babel5 annotatemyids4 BLAST4 bx-python4 gffread4 MaxQuant4 MEGAHIT4 msConvert4 MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4 Salmon4 SRA Software Toolkit4 Stacks4 StringTie4 Unicycler4 Biopython3 Bwa-mem23 Cardinal3 Clustal 2 (Clustal W, Clustal X)3 COMBAT-TB Workbench3 GenomeScope 2.03 GOseq3 Gromacs3 HUMAnN23 Merqury3 MetaPhlAn3 MSstatsTMT3 Newick Utilities3 Prokka3 pyGenomeTracks3 Racon3 snippy3 Bakta2 Bio3D2 Bracken2 CellProfiler2 ChEMBL2 chemfp2 compute_sequence_length2 cshl_fastx_reverse_complement2 Diamond2 eggNOG-mapper v22 epiScanpy2 funannotate2 Galaxy Image Analysis2 gffcompare2 humann2 InterProScan (EBI)2 KrakenTools2 limma2 lofreq2 MAKER2 MDAnalysis2 Medaka2 metaQuantome2 metaspades2 NGSUtils2 The Protein Data Bank (PDB)2 QIIME2 R2 RDKit2 RepeatMasker2 scikit-image2 SeqCode2 snpEff2 staramr2 tb-profiler2 tbl2gff32 UMI-tools2 Unipept2 UniProt2 Vcflib2 Workflow4Metabolomics2 xcms2 ABRicate1 AmberTools1 antiSMASH1 Apollo1 AUGUSTUS1 bed to protein map1 BioRuby1 blockbuster1 Bowtie1 ChemicalToolbox1 ChIPpeakAnno1 ChiRA1 Circos1 Clair31 clusterProfiler1 customProDB1 diaPASEF1 EGA1 EGSEA1 European Nucleotide Archive (ENA)1 ewastools1 export2graphlan1 FastTree1 FASTX-Toolkit1 FEELnc1 fgsea1 Filtlong1 FlashLFQ1 FREEC1 GAEVAL1 Galaxy1 GATK1 GECKO1 gfastats1 GOEnrichment1 GraPhlAn1 Heinz1 HiCExplorer1 Integron Finder1 ISEScan1 IsoformSwitchAnalyzeR1 IWTomics1 Krona1 LASTZ1 MAFFT1 MAGeCK1 MALDIquant1 Matchms1 MEME1 MethylDackel1 miniasm1 miRDeep21 MLST1 MSstats1 mzToSQLite1 NCBI Resources1 Nextflow1 OBITools1 pangolin1 pathview1 Peakachu1 PfamScan1 pilon1 PlasFlow1 PlasmidFinder1 Polypolish1 Proteinortho1 purge_dups1 PYLFIRE1 pymethylprocess1 RAMClustR1 RapidNJ1 RAxML1 RCAS1 Recentrifuge1 RED1 RIAssigner1 rnaQUAST1 SALSA1 scater1 shovill1 Smudgeplots1 SNAP1 SortMeRNA1 SPAdes1 SuCOS1 Targetfinder.org1 TransDecoder1 TRANSIT1 Trinity1 Trinotate1 VarScan1 VelvetOptimiser1 WoLF PSORT1 More...

Galaxy310 COMPSs19 Common Workflow Language12 Nextflow8 Snakemake4 Jupyter1 My type1 Taverna1 More...

Proteomics30 Transcriptomics28 microbiome19 ecology17 assembly16 genome-annotation15 variant-analysis15 statistics14 name:transcriptomics12 visualisation12 computational-chemistry10 covid-199 epigenetics9 ml9 name:singlecell9 galaxy-interface8 introduction8 LG-WF8 name:training8 cancer6 covid19.galaxyproject.org6 UX6 climate5 nanopore5 pediatric5 single-cell5 evolution4 GTN4 HiFi4 Metabolomics4 name:BY-COVID4 name:scRNA-seq4 SARS-CoV-24 sequence-analysis4 synthetic-biology4 Cheminformatics3 earth-system3 fastq3 genome_assembly3 genome-assembly3 hifiasm3 imaging3 metagenomics3 name:trajectory_analysis3 Ocean3 Pangeo3 rna-seq3 ARTIC2 cat2 CellProfiler2 classification2 contributing2 cosifer2 microgalaxy2 name:single-cell2 nf-core2 test2 10x1 alignment1 arabidopsis1 asaim1 ATACseq1 big-data1 clustering1 community-detection1 copernicus1 deeplearning1 emergen_validated1 example1 Expospomics1 fnn1 GC-MS1 Genomics1 geosciences1 hCNV1 introductions1 Isoseq1 iwc1 iwtomics1 Marineomics1 MaxQuant1 MIRACUM1 mirna1 moleculardynamics1 name:alternative_splicing1 name:circos1 name:data-management1 name:deconvolution1 name:GTN1 name:single_cell1 name:viz1 networks1 NormalyzerDE1 ONT1 PacBio1 prokaryote1 PubMed1 PubTator1 purge_dups1 regression1 reverse1 rna1 samtools1 SDRF1 sempi31 text-mining1 vgp1 More...

Helena Rasche284 Raül Sirvent17 Finn Bacall12 Simone Leo10 Jane Doe10 Laura Rodriguez-Navas9 Stian Soiland-Reyes7 Douglas Lowe6 Johan Gustafsson3 Robin Long2 Stuart Owen1 Hervé Ménager1 Alban Gaignard1 Luca Pireddu1 JEAN-MARIE BUREL1 Kim Philipp Jablonski1 Alexandra Has1 Paolo Uva1 Nandan Deshpande1 Terry Bertozzi1 More...

Galaxy Training Network284 Testing53 LifeMonitorDev9 iPC: individualizedPaediatricCure5 Australian BioCommons Dev5 My team3 UX study leave2 UX study koehorst2 test1 V-pipe1 Team11 ux study team1 UXStudy1 Testing_proteomics1 IGG-Bioinfo1 More...

General370

Raül Sirvent8 Genís Bayarri6 Alexandra Has6 Laura Rodriguez-Navas5 José Mª Fernández2 Alban Gaignard1 Mar Batlle1 Jasper Koehorst1 Georgie Samaha1 Nandan Deshpande1 Terry Bertozzi1 More...

INB collection2 nf-core2 Test Collection1 IDR1

Marine biology1 Metagenomics1 Sequence assembly1

Genome assembly2 Phylogenetic footprinting1 Sequence clustering1

Stable20 Work-in-progress12

Not available8 Passing3 All failing1