Workflows

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458 Workflows visible to you, out of a total of 560

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Type: Galaxy

Creators: None

Submitter: Finn Bacall

Stable

Exome Alignment Workflow

Type: Common Workflow Language

Creator: Laura Rodriguez-Navas

Submitter: Laura Rodriguez-Navas

Stable

COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

alt text

Reference

[Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular ...

Stable

COnSensus Interaction Network InFErence Service

Inference framework for reconstructing networks using a consensus approach between multiple methods and data sources.

alt text

Reference

[Manica, Matteo, Charlotte, Bunne, Roland, Mathis, Joris, Cadow, Mehmet Eren, Ahsen, Gustavo A, Stolovitzky, and María Rodríguez, Martínez. "COSIFER: a python package for the consensus inference of molecular ...

Type: Common Workflow Language

Creators: José Mª Fernández, Laura Rodriguez-Navas

Submitter: Laura Rodriguez-Navas

Stable
  1. Name of the application: Adapter removal hello world
  2. Name of the application: Mapping and bam sorting goodbye world

1. Name of the application: Adapter removal hello world 2. Name of the application: Mapping and bam sorting goodbye world

Type: Taverna

Creators: None

Submitter: Finn Bacall

DOI: 10.81082/dev-workflowhub.workflow.136.1

Preprocessing of raw SARS-CoV-2 reads

The raw reads available so far are generated from bronchoalveolar lavage fluid (BALF) and are metagenomic in nature: they contain human reads, reads from potential bacterial co-infections as well as true COVID-19 reads.

Live Resources

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Galaxy workflow
...

Type: Galaxy

Creators: None

Submitter: Finn Bacall

Stable

Summary

Jupyter Notebook containing a tutorial to illustrate the process of ligand parameterization for a small molecule, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Sulfasalazine protein (3-letter code SAS), used to treat rheumatoid arthritis, ulcerative colitis, and Crohn's disease.

OpenBabel and ACPype packages are used to add hydrogens, energetically minimize the structure, and generate parameters for the GROMACS package. With Generalized ...

Type: Unrecognized workflow type

Creator: Genís Bayarri

Submitter: Robin Long

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