Workflows
What is a Workflow?Filters
Example to show how a long list of authors can be mapped easily to Zenodo or WorkflowHub, including manual fixes
Type: COMPSs
Creators: Rosa M Badia, Raül Sirvent, Nicolò Giacomini, Panna Lukács, Daniele Lezzi, Omar Briqa, Tomás Arañó Loxton, Andreu Martin Ferrer, Francesc Lordan, Eduardo Iraola de Acevedo, Mauro García Lorenzo, Xavier Casas Moreno, Philip Cummins, Álvaro Ricón Ruiz, Roc Cutal Gendrau, Javier Conejero, Fernando Vázquez Novoa, Cristian Cătălin Tatu, Mar Tejedor, Miguel Carrasco Arango, Annika Nel, albert vico oton, Marcos Pérez Guillén, Marta Bertran Ferrer, Yolanda Becerra, Enric Sosa Cintero, Marc Monfort Grau, David Cano Cañardo
Submitter: Raül Sirvent
Example to show how a long list of authors can be mapped easily to Zenodo or WorkflowHub
Type: COMPSs
Creators: Rosa M Badia, Raül Sirvent, Nicolò Giacomini, Panna Lukács, Daniele Lezzi, Omar Briqa, Tomás Arañó, Andreu Martin, Francesc Lordan, Eduardo Iraola de Acevedo, Mauro García Lorenzo, Xavier Casas Moreno, Philip Cummins, Álvaro Ricón, Roc Cutal, Javier Conejero, Fernando Vázquez Novoa, Cristian Cătălin Tatu, Mar Tejedor, Miguel Carrasco, Annika Nel, albert vico oton, Marcos Pérez, Marta Bertran Ferrer, Yolanda Becerra, Enric Sosa Cintero, Marc Monfort Grau, David Cano
Submitter: Raül Sirvent
Hypermatrix size 2x2 blocks, block size 2x2 elements
Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). The contigs are purged from the first assembly (hap1, pri...), added to the second assembly (hp2, alt... ), then the 2nd assembly is purged as well. If you think only one of the assemblies needs purging, use the VGP6b workflow. This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5).
PyCOMPSs VLAVA run in linux, local laptop experiment test
Type: COMPSs
Creators: Louise Cordrie, Giovanni Macedonnio, Antonio Costa, Roberto Spina, Francesco Zuccarello, Gaetana Ganci, Annalisa Cappello
Submitter: Raül Sirvent
Prostate cancer classification workflow
This workflow segments tissue regions and classifies prostate cancer on H&E whole slide images, using AI. It consists of three steps:
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low-resolution tissue segmentation to select areas for further processing;
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high-resolution tissue segmentation to refine borders - it uses step 1 as input;
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high-resolution normal/cancer classification - it uses step 1 as input.
Tissue segmentation workflow
This workflow performs tissue segmentation on H&E whole slide images using AI.
