A workflow for marine Genomic Observatories data analysis

An EOSC-Life project

The workflows developed in the framework of this project are based on pipeline-v5 of the MGnify resource.

This branch is a child of the pipeline_5.1 branch that contains all CWL descriptions of the MGnify ...

Optional workflow to purge duplicates from the contig assembly.

Infrastructure_deployment_metadata: Galaxy Australia (Galaxy)

Galaxy!

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An example Workflow RO-Crate, showing a Galaxy workflow with an abstract CWL description and diagram. This Crate is deliberately excessively populated to show the exensible possibilities (e.g. including a BioCompute Object and a Planemo test), refer to the Workflow RO-Crate profile for minimal requirements.

V-pipe is a snakemake pipeline designed for analysing NGS data of short viral genomes.