Workflows

What is a Workflow?
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Updated At
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39 Workflows visible to you, out of a total of 80

workflow-test-fixture

A workflow and associated files for use in SEEK's tests

Type: Galaxy

Creator: Finn Bacall

Submitter: Finn Bacall

nf-core/rnaseq nf-core/rnaseq

GitHub Actions CI Status GitHub Actions Linting Status ...

Type: Nextflow

Creators: None

Submitter: Finn Bacall

An example Workflow RO-Crate, showing a Galaxy workflow with an abstract CWL description and diagram. This Crate is deliberately excessively populated to show the exensible possibilities (e.g. including a BioCompute Object and a Planemo test), refer to the Workflow RO-Crate profile for minimal requirements.

Type: Galaxy

Creator: Stian Soiland-Reyes

Submitter: Stian Soiland-Reyes

V-pipe is a snakemake pipeline designed for analysing NGS data of short viral genomes.

Type: Common Workflow Language

Creators: Alban Gaignard, Susana Posada Céspedes, David Seifert, Tobias Marschall, Niko Beerenwinkel

Submitter: Alban Gaignard

This PyCOMPSs workflow tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) in PyCOMPSs for execution on HPC. Three variants of the MD Setup workflows are included, supporting a list of structures, a list of mutations, or a cumulative set of mutations.

Type: PyCOMPSs

Creator: Adam Hospital, Pau Andrio

Submitter: Stian Soiland-Reyes

Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps:

  • FastQC (read quality control)
  • NGTax 2.0
  • Picrust 2
  • Export module for ngtax

Type: Common Workflow Language

Creators: None

Submitter: Finn Bacall

Work-in-progress

This PyCOMPSs workflow tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb) in PyCOMPSs for execution on HPC. Three variants of the MD Setup workflows are included, supporting a list of structures, a list of mutations, or a cumulative set of mutations.

Type: PyCOMPSs

Creator: Adam Hospital, Pau Andrio

Submitter: Stian Soiland-Reyes

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