Workflows

Hypermatrix size 2x2 blocks, block size 2x2 elements

Multi-band array detection and location of seismic sources. BackTrackBB is a program for detection and space-time location of seismic sources based on multi-scale, frequency-selective statistical coherence of the wave field recorded by dense large-scale seismic networks and local antennas. The method is designed to enhance coherence of the signal statistical features across the array of sensors and consists of three steps. They are signal processing, space-time imaging and detection and location. ...

A simple example of a CWL workflow with a single Hello world tool from Dockstore.

SARS-CoV-2 Sequence Quality Assurance Workflow Kontraption, version 4.0.2

This workflow take as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will plot the number of reads for each fragment length.

K-means clustering is a method of cluster analysis that aims to partition ''n'' points into ''k'' clusters in which each point belongs to the cluster with the nearest mean. It follows an iterative refinement strategy to find the centers of natural clusters in the data.

Hypermatrix size 2x2 blocks, block size 2x2 elements