MuSiC-Deconvolution: Compare
1.0

Workflow Type: Galaxy

This workflow runs 3 comparisons using MuSiC Deconvolution compare: where datasets cell compositions are inferred from a reference containing healthy and diseased cells; where diseased are inferred from disease and healthy from healthy; and where both diseased and healthy are inferred from a healthy reference.

Associated Tutorial

This workflows is part of the tutorial MuSiC-Deconvolution: Compare, available in the GTN

Thanks to...

Tutorial Author(s): Wendi Bacon, Mehmet Tekman

Tutorial Contributor(s): Marisa Loach

Workflow Author(s): Wendi Bacon, Mehmet Tekman

SEEK ID: https://dev.workflowhub.eu/workflows/1223?version=1

Inputs

ID	Name	Description	Type
ESet Object - Bulk:T2D	#main/ESet Object - Bulk:T2D	n/a	File
ESet Object - Bulk:normal	#main/ESet Object - Bulk:normal	n/a	File
ESet Object - Single cell Total	#main/ESet Object - Single cell Total	n/a	File
ESet Object - Single cell:T2D	#main/ESet Object - Single cell:T2D	n/a	File
ESet Object - Single cell:normal	#main/ESet Object - Single cell:normal	n/a	File

Steps

ID	Name	Description
5	MuSiC Compare: Like with like	Here the T2D bulk sample is inferred from the sc T2D sample, while the normal bulk sample is inferred from the sc normal sample toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
6	MuSiC Compare: healthyscref	Here the T2D bulk sample and the normal sample are separately compared separately against the healthy sc reference only (excluding unhealthy sc reference) toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4
7	MuSiC Compare - Altogether	toolshed.g2.bx.psu.edu/repos/bgruening/music_compare/music_compare/0.1.1+galaxy4

Outputs

ID	Name	Description	Type
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_10	#main/_anonymous_output_10	n/a	File
_anonymous_output_11	#main/_anonymous_output_11	n/a	File
_anonymous_output_12	#main/_anonymous_output_12	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File
_anonymous_output_3	#main/_anonymous_output_3	n/a	File
_anonymous_output_4	#main/_anonymous_output_4	n/a	File
_anonymous_output_5	#main/_anonymous_output_5	n/a	File
_anonymous_output_6	#main/_anonymous_output_6	n/a	File
_anonymous_output_7	#main/_anonymous_output_7	n/a	File
_anonymous_output_8	#main/_anonymous_output_8	n/a	File
_anonymous_output_9	#main/_anonymous_output_9	n/a	File

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:12 by Helena Rasche

Added/updated 4 files

Open master 6522faa

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC

License

Creative Commons Attribution 4.0 International

Activity

Views: 438 Downloads: 96

Created: 25th Jun 2024 at 11:12

Last updated: 25th Jun 2024 at 11:12

MuSiC-Deconvolution: Compare 1.0