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FastQC45 MultiQC29 SAMtools24 SCANPY20 Cutadapt17 QUAST16 Bowtie 214 BWA14 ggplot214 BEDTools13 BUSCO13 fastp13 scikit-learn13 Bandage12 JBrowse12 mothur11 MaxQuant10 Minimap210 BamTools9 DeepTools9 DropletUtils9 FreeBayes9 kraken29 msConvert9 BCFtools8 NanoPlot8 seqtk8 Trimmomatic8 Flye7 HISAT27 MACS7 STAR7 taxonomy_krona_chart7 BLAST6 FeatureCounts6 Open Babel6 RSeQC6 Trim Galore6 Unipept6 UniProt6 COMBAT-TB Workbench5 DESeq25 Galactic Circos5 GEMINI5 Merqury5 Prokka5 Salmon5 StringTie5 Unicycler5 annotatemyids4 Bwa-mem24 bx-python4 epiScanpy4 GenomeScope 2.04 gffcompare4 gffread4 KrakenTools4 MEGAHIT4 metaQuantome4 MSstatsTMT4 MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4 pyGenomeTracks4 snippy4 SRA Software Toolkit4 Stacks4 Biopython3 Bracken3 Cardinal3 Clustal 2 (Clustal W, Clustal X)3 GOseq3 Gromacs3 HUMAnN23 InterProScan (EBI)3 MetaPhlAn3 MSstats3 Newick Utilities3 Racon3 tb-profiler3 Bakta2 bed to protein map2 Bio3D2 CellProfiler2 ChEMBL2 chemfp2 compute_sequence_length2 cshl_fastx_reverse_complement2 customProDB2 Diamond2 diaPASEF2 eggNOG-mapper v22 FastTree2 FlashLFQ2 funannotate2 Galaxy Image Analysis2 gfastats2 GOEnrichment2 humann2 limma2 lofreq2 MAFFT2 MAKER2 MDAnalysis2 Medaka2 MetaNovo2 metaspades2 mzToSQLite2 NGSUtils2 The Protein Data Bank (PDB)2 pilon2 purge_dups2 QIIME2 R2 RAxML2 RDKit2 Recentrifuge2 RepeatMasker2 SALSA2 scikit-image2 SeqCode2 snpEff2 staramr2 tbl2gff32 UMI-tools2 Vcflib2 WoLF PSORT2 Workflow4Metabolomics2 xcms2 ABRicate1 AmberTools1 antiSMASH1 Apollo1 AUGUSTUS1 blockbuster1 Bowtie1 ChemicalToolbox1 ChIPpeakAnno1 ChiRA1 Circos1 Clair31 clusterProfiler1 compleasm1 dada21 EGA1 EGSEA1 European Nucleotide Archive (ENA)1 ewastools1 export2graphlan1 FASTX-Toolkit1 FEELnc1 fgsea1 Filtlong1 FREEC1 GAEVAL1 GECKO1 g:Profiler1 GraPhlAn1 Heinz1 Helixer1 HiCExplorer1 Integron Finder1 iqtree1 ISEScan1 IsoformSwitchAnalyzeR1 IWTomics1 Krona1 LASTZ1 lotus21 MAGeCK1 MALDIquant1 Matchms1 MEME1 MethylDackel1 miniasm1 miRDeep21 NCBI Resources1 OBITools1 pangolin1 pathview1 Peakachu1 PfamScan1 phyloseq1 PlasFlow1 PlasmidFinder1 Polypolish1 Prodigal1 Proteinortho1 QualiMap1 RAMClustR1 RapidNJ1 RCAS1 RED1 RIAssigner1 rnaQUAST1 scater1 shovill1 Smudgeplots1 SNAP1 SortMeRNA1 SPAdes1 SuCOS1 Targetfinder.org1 TransDecoder1 TRANSIT1 Trinity1 Trinotate1 VarScan1 VelvetOptimiser1 More...

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Galaxy301 GTN301 Proteomics49 Transcriptomics32 assembly18 ecology18 genome-annotation15 microbiome15 statistics14 variant-analysis14 name:transcriptomics12 name:singlecell11 computational-chemistry10 epigenetics10 Name:clinicalmp10 name:training10 evolution9 introduction9 LG-WF9 ml9 galaxy-interface8 single-cell8 imaging6 climate5 Metabolomics5 Name:collection5 Name:iwc5 Name:microgalaxy5 Name:pathogfair5 sequence-analysis5 earth-system4 name:BY-COVID4 name:scRNA-seq4 name:single-cell4 Ocean4 visualisation4 Cheminformatics3 name:trajectory_analysis3 Pangeo3 synthetic-biology3 10x2 CellProfiler2 classification2 contributing2 GC-MS2 Marineomics2 metagenomics2 microgalaxy2 name:data-management2 vgp2 arabidopsis1 asaim1 big-data1 cancer1 clustering1 copernicus1 deeplearning1 Exposomics1 Expospomics1 fnn1 Fungi1 Genomics1 geosciences1 hCNV1 Imagerecognition1 introductions1 iwtomics1 Lotus21 Ludwig1 MIRACUM1 mirna1 Mnist1 moleculardynamics1 name:circos1 name:deconvolution1 Name:erga1 name:GTN1 Name:nanopore1 name:single_cell1 name:viz1 Pathogen1 PubMed1 PubTator1 Qcxms1 Referencegenome1 regression1 Reviewed1 rna1 Scatac-seq1 sempi31 text-mining1 Tuberculosis1 Vgp_curated1 More...

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