Workflows
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Workflow type
Nextflow86
Tag
nf-core20
annotation2
assembly2
dna2
genome-assembly2
metagenomics2
Proteomics2
rna2
16s1
adna1
amplicon-sequencing1
ancientdna1
atac-seq1
b-cell1
bacterial-genomes1
binning1
Bioinformatics1
bisulfite-sequencing1
cage1
cage-seq1
cageseq-data1
chip1
chip-seq1
chromatin-accessibiity1
chromatin-immunoprecipitation1
clinical1
crispr1
crispr-cas91
data-independent-proteomics1
deep-variant1
denovo1
denovo-assembly1
dia-proteomics1
dna-methylation1
gene-expression1
google1
guide-seq1
hla1
hla-typing1
hybrid-assembly1
immcantation1
immune1
immunology1
k-mer1
kmer1
kmer-counting1
kmer-frequency-count1
macs21
mass-spectrometry1
methyl-seq1
nanopore1
nanopore-sequencing1
ngs-pipeline1
optitype1
pathogen-genomics1
peak-calling1
peptides1
personalized-medicine1
population-genetics1
qiime1
rrna1
shotgun-ms1
variant-annotation1
variant-calling1
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Team
nf-core86
Collection
nf-core18
86
Workflows visible to you, out of a total of 86
GATK4 RNA variant calling pipeline
An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing
Type: Nextflow
Creators: Maxime Garcia, Szilveszter Juhos, Friederike Hanssen
Submitter: WorkflowHub Sandbox Bot
RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.
Type: Nextflow
Creators: Harshil Patel, Phil Ewels, Rickard Hammarén
Submitter: WorkflowHub Sandbox Bot
Alternative splicing analysis using RNA-seq.
call and score variants from WGS/WES of rare disease patients
A workflow to simulate reads
Analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting)
