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Workflow type
Nextflow89
Tag
nf-core20
metagenomics6
rna5
assembly4
10x-genomics3
10xgenomics3
adna3
annotation3
dna3
genome-assembly3
nanopore3
rna-seq3
single-cell3
variant-calling3
16s2
amplicon-sequencing2
ancientdna2
atac-seq2
binning2
bisulfite-sequencing2
chip2
chip-seq2
chromatin-accessibiity2
chromatin-immunoprecipitation2
crispr2
denovo-assembly2
dna-methylation2
hla2
hla-typing2
illumina2
image-processing2
immunology2
long-read-sequencing2
macs22
methyl-seq2
microbiome2
nanopore-sequencing2
optitype2
pathogen-genomics2
peak-calling2
personalized-medicine2
population-genetics2
Proteomics2
rrna2
spatial2
Transcriptomics2
18s1
alevin1
amplicon1
ancient-dna1
ancient-dna-analysis1
ARTIC1
b-cell1
bacterial-genomes1
Bioinformatics1
bustools1
cage1
cage-seq1
cageseq-data1
cellranger1
clinical1
consensus1
coprolite1
covid-191
covid191
crispr-analysis1
crispr-cas1
crispr-cas91
cutandrun1
cutandrun-seq1
cutandtag1
cutandtag-seq1
data-independent-proteomics1
deep-variant1
denovo1
dia-proteomics1
edna1
em-seq1
epigenome1
epigenomics1
fish1
fusion1
fusion-genes1
gatk41
gene-expression1
gene-fusion1
genome1
google1
guide-seq1
hybrid-assembly1
imaging1
immcantation1
immune1
iontorrent1
its1
k-mer1
kallisto1
kmer1
kmer-counting1
kmer-frequency-count1
linked-reads1
mass-spectrometry1
metabarcoding1
metagenomes1
microscopy1
molecularcartography1
ngs1
ngs-pipeline1
ONT1
oxford-nanopore1
PacBio1
pbat1
peptides1
qiime1
qiime21
rnaseq1
rrbs1
SARS-CoV-21
segmentation1
shotgun-ms1
small-rna1
smrna-seq1
spatial-transcriptomics1
st1
star-solo1
supernova1
taxonomic-classification1
taxonomic-profiling1
umi1
umis1
unique-molecular-identifier1
variant-annotation1
viral1
virus1
visium1
worflow1
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Team
nf-core89
Collection
nf-core18
89
Workflows visible to you, out of a total of 89
A workflow to simulate reads
Analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting)
Quantitative Mass Spectrometry nf-core workflow
Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.
Type: Nextflow
Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol
Submitter: WorkflowHub Sandbox Bot
Protein 3D structure prediction pipeline
Type: Nextflow
Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
Submitter: WorkflowHub Sandbox Bot
Pipeline for analysis of Molecular Pixelation assays
Performs phylogenetic placement with EPA-NG