Workflows
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Proteogenomics database creation workflow using pypgatk framework.
A comprehensive cancer NGS analysis and reporting pipeline
The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs
Global Run-On sequencing analysis pipeline
Type: Nextflow
Creators: Edmund Miller, Ignacio Tripodi, Margaret Gruca
Submitter: WorkflowHub Sandbox Bot
A pipeline to demultiplex, QC and map Nanopore data
A Nanostring nCounter analysis pipeline
MNase-seq analysis pipeline using BWA and DANPOS2.