Workflows

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.

Google DeepVariant variant caller as a Nextflow pipeline

Demultiplexing pipeline for Illumina sequencing data

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes sequencing QC, spike-in normalisation, IgG control normalisation, peak calling and downstream peak analysis.

Coprolite Identification

Pipeline for the analysis of CRISPR data

CLIP analysis pipeline