Workflows
What is a Workflow?Filters
Taxonomic classification and profiling of shotgun short- and long-read metagenomic data
Type: Nextflow
Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, and the nf-core/taxprofiler team
Submitter: WorkflowHub Sandbox Bot
Spatial Transcriptomics
Type: Nextflow
Creators: Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava
Submitter: WorkflowHub Sandbox Bot
SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC
An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing
Type: Nextflow
Creators: Maxime Garcia, Szilveszter Juhos, Friederike Hanssen
Submitter: WorkflowHub Sandbox Bot
RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.
Type: Nextflow
Creators: Harshil Patel, Phil Ewels, Rickard Hammarén
Submitter: WorkflowHub Sandbox Bot
Alternative splicing analysis using RNA-seq.
call and score variants from WGS/WES of rare disease patients
