Workflows

A comprehensive cancer NGS analysis and reporting pipeline

The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs

Global Run-On sequencing analysis pipeline

De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.

A pipeline to demultiplex, QC and map Nanopore data

A Nanostring nCounter analysis pipeline

An analysis pipeline for Molecular Cartography data from Resolve Biosciences.