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MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
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Galaxy391
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Common Workflow Language32
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GTN302
Galaxy301
Proteomics51
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assembly26
nf-core22
covid-1920
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microbiome17
genome-annotation15
statistics14
variant-analysis14
name:transcriptomics12
name:singlecell11
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introduction9
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visualisation5
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earth-system4
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annotation3
cat3
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fastq3
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name:trajectory_analysis3
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test3
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16s2
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ancientdna2
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binning2
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CellProfiler2
chip2
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chromatin-immunoprecipitation2
classification2
contributing2
cosifer2
covid192
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denovo-assembly2
dna-methylation2
GC-MS2
hla2
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illumina2
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immunology2
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macs22
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methyl-seq2
microgalaxy2
name:data-management2
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optitype2
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18s1
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Helena Rasche345
WorkflowHub Sandbox Bot72
Finn Bacall53
Raül Sirvent20
Stian Soiland-Reyes15
Laura Rodriguez-Navas12
Simone Leo10
Jane Doe10
Ignacio Eguinoa8
Douglas Lowe6
Stuart Owen3
Bert Droesbeke3
Johan Gustafsson3
Robin Long2
Kiran K Telukunta1
Kaushik Ghose1
Hervé Ménager1
Alban Gaignard1
Luca Pireddu1
JEAN-MARIE BUREL1
Kim Philipp Jablonski1
Alexandra Has1
Paolo Uva1
Nandan Deshpande1
Terry Bertozzi1
Eli Chadwick1
yi.sun@embl.de1
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Galaxy Training Network345
nf-core89
Testing56
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Workflow Hub Administration11
MGnify9
LifeMonitorDev9
Galaxy COVID-198
iPC: individualizedPaediatricCure5
Australian BioCommons Dev5
IWC Workflows4
Demonstrator #73
test3
My team3
UX study leave2
UX study koehorst2
Seven Bridges Open Workflows1
V-pipe1
Team11
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UXStudy1
Testing_proteomics1
IGG-Bioinfo1
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Space
General438
575
Workflows visible to you, out of a total of 680
Precision HLA typing from next-generation sequencing data using OptiType.
Table of Contents
Introduction Quick Start
With Docker With Singularity
Documentation Pipeline DAG
Input fastq Input bam
Credits
Introduction
OptiType is a HLA genotyping algorithm based on integer linear programming. Reads of whole exome/genome/transcriptome sequencing data are mapped against a reference of known MHC class I alleles. To produce accurate 4-digit HLA genotyping predictions, all major and minor HLA-I loci are ...