Workflows
What is a Workflow?Filters
Assembly and intrahost/low-frequency variant calling for viral samples
Integration of viral sequences in genomic data
Taxonomic classification and profiling of shotgun short- and long-read metagenomic data
Type: Nextflow
Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, and the nf-core/taxprofiler team
Submitter: WorkflowHub Sandbox Bot
Spatial Transcriptomics
Type: Nextflow
Creators: Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava
Submitter: WorkflowHub Sandbox Bot
Small RNA-Seq Best Practice Analysis Pipeline.
Type: Nextflow
Creators: P. Ewels, C. Wang, R. Hammarén, L. Pantano, A. Peltzer
Submitter: WorkflowHub Sandbox Bot
SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC
Pipeline for processing 10x Genomics single cell rnaseq data
Type: Nextflow
Creators: Bailey PJ, Botvinnik O, Marques de Almeida F, Peltzer A, Sturm G
Submitter: WorkflowHub Sandbox Bot
